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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
102
single cell RNA-seq
99
ChIP-seq
59
total RNA-seq
31
DNase-seq
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
183
DNA accessibility
163
Transcription
99
DNA binding
11
DNA methylation
6
3D chromatin structure
Target of assay
109
histone
109
histone modification
57
broad histone mark
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
48
July, 2018
44
June, 2019
43
April, 2018
43
May, 2021
41
September, 2018
33
August, 2017
31
July, 2019
25
October, 2019
12
February, 2023
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
February, 2021
3
June, 2018
2
August, 2021
2
October, 2018
1
March, 2020
1
November, 2018
Available data
345
bam
330
bigWig
179
fastq
168
tsv
130
bed narrowPeak
83
bigBed narrowPeak
41
bed broadPeak
41
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
9
tagAlign
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
463
Homo sapiens
Biosample type
2383
tissue
622
cell line
463
primary cell
334
in vitro differentiated cells
7
stem cell
Organ
209
epithelium
142
pancreas
34
connective tissue
31
kidney
29
vasculature
24
blood vessel
18
brain
16
vein
12
liver
11
heart
10
musculature of body
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
463
AMP
324
HPAP
164
T1D
1
ITG
0
KPMP
Genome assembly (visualization)
352
hg19
262
GRCh38
Lab
438
AMP-T2D consortium
25
Kyle Gaulton, UCSD
Audit category:
40
inconsistent ontology term
1
audit script error
Audit category:
missing controlled_by
Audit category:
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
463 results
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ATAC-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic beta cell
7
12
9
10
pancreatic alpha cell
6
12
9
10
CD8-positive, alpha-beta T cell
2
23
2
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
1
CD4-positive, alpha-beta memory T cell
22
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