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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
401
ChIP-seq
23
ATAC-seq
5
DNase-seq
Assay category
401
DNA binding
28
DNA accessibility
Target of assay
318
transcription factor
81
recombinant protein
80
histone modification
79
histone
54
RNA binding protein
50
narrow histone mark
29
broad histone mark
17
chromatin remodeller
2
other context
2
other post-translational modification
Date released
239
November, 2017
50
December, 2017
49
November, 2018
27
May, 2020
20
May, 2022
18
August, 2017
17
August, 2021
6
October, 2019
2
June, 2019
1
February, 2021
Available data
668
bam
610
bigWig
452
fastq
429
bed narrowPeak
346
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
429
Homo sapiens
Biosample type
296
cell line
113
tissue
14
in vitro differentiated cells
6
primary cell
Organ
429
liver
200
brain
191
heart
183
kidney
177
pancreas
133
vasculature
129
blood vessel
128
epithelium
92
limb
75
connective tissue
74
artery
60
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
429
AMP
Genome assembly (visualization)
425
hg19
362
GRCh38
Lab
395
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
missing controlled_by
Audit category:
20
inconsistent control read length
2
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
429 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
295
1
tissue
liver
82
20
2
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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