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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
358
ChIP-seq
Assay category
358
DNA binding
Target of assay
358
histone
358
histone modification
225
broad histone mark
133
narrow histone mark
77
transcription factor
32
RNA binding protein
4
chromatin remodeller
3
other context
3
other post-translational modification
Date released
92
May, 2019
60
November, 2017
59
April, 2019
42
October, 2019
30
August, 2017
30
October, 2018
19
June, 2019
17
December, 2017
6
January, 2019
3
October, 2017
Available data
770
bed narrowPeak
769
bigWig
683
bam
358
bigBed narrowPeak
306
tagAlign
161
fastq
47
bed broadPeak
21
bed bed3+
14
bigBed broadPeak
1
tagAlign bed3+
Organism
352
Homo sapiens
Biosample type
309
tissue
37
primary cell
cell line
12
in vitro differentiated cells
Organ
88
brain
66
vasculature
65
blood vessel
56
heart
48
limb
43
pancreas
29
epithelium
24
nerve
22
kidney
22
liver
20
artery
14
musculature of body
vein
9
connective tissue
6
spleen
1
adipose tissue
1
eye
Project
358
AMP
Genome assembly (visualization)
357
GRCh38
306
hg19
Lab
358
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
7
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
biosample_type!
cell line
organ_slims!
vein
BIOSAMPLE
ASSAY
358 results
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Clear Filters
ChIP-seq
tissue
tibial nerve
24
heart left ventricle
23
kidney
18
tibial artery
18
body of pancreas
17
+ See 25 more…
primary cell
skeletal muscle myoblast
12
skeletal muscle satellite cell
7
mesenchymal stem cell
6
kidney epithelial cell
3
cardiac fibroblast
2
+ See 7 more…
in vitro differentiated cells
hepatocyte
12
See all biosamples
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