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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
465
total RNA-seq
74
ChIP-seq
8
ATAC-seq
8
DNase-seq
6
WGBS
4
single cell RNA-seq
3
pCHi-C
3
small RNA-seq
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
472
Transcription
74
DNA binding
16
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Target of assay
41
histone
41
histone modification
27
control
24
broad histone mark
17
narrow histone mark
6
RNA binding protein
6
transcription factor
Date released
447
February, 2021
45
August, 2017
23
October, 2018
18
July, 2019
18
June, 2019
6
November, 2020
2
April, 2018
2
February, 2020
2
July, 2018
2
October, 2019
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
522
bam
501
bigWig
472
tsv
34
fastq
30
bed narrowPeak
25
bigBed narrowPeak
10
bed bed3+
9
bed broadPeak
8
bigBed broadPeak
8
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3
1
hdf5
Organism
573
Homo sapiens
Biosample type
535
tissue
in vitro differentiated cells
39
primary cell
stem cell
Organ
889
pancreas
763
liver
574
connective tissue
479
epithelium
478
adipose tissue
392
heart
354
kidney
282
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
25
spleen
22
vein
20
lung
18
ureter
skeleton
8
embryo
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
573
AMP
1
T1D
Genome assembly (visualization)
504
hg19
500
GRCh38
Lab
573
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
14
inconsistent ontology term
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
biosample_type!
in vitro differentiated cells
stem cell
organ_slims!
skeleton
BIOSAMPLE
ASSAY
574 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
pCHi-C
small RNA-seq
Hi-C
RNA microarray
RRBS
tissue
adipose tissue
382
2
3
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
1
+ See 3 more…
primary cell
cardiac fibroblast
5
3
1
osteoblast
5
2
1
1
mesenchymal stem cell
7
pancreatic stellate cell
4
brain pericyte
1
1
+ See 7 more…
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