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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
156
total RNA-seq
155
ATAC-seq
107
single cell RNA-seq
22
ChIP-seq
8
snATAC-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
1
whole genome sequencing assay
Assay category
263
Transcription
163
DNA accessibility
22
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
6
histone
6
histone modification
5
control
4
narrow histone mark
2
broad histone mark
1
RNA binding protein
Date released
689
February, 2021
396
November, 2017
341
May, 2020
309
August, 2017
306
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
85
November, 2018
80
April, 2019
76
October, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
41
September, 2018
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
144
bed narrowPeak
132
tsv
76
fastq
64
xls
61
txt
25
bigWig
12
bam
5
bed bed3
4
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
464
Homo sapiens
Biosample type
324
tissue
92
primary cell
in vitro differentiated cells
50
cell line
Organ
130
kidney
128
heart
60
pancreas
58
epithelium
41
blood vessel
41
vasculature
37
artery
35
liver
31
eye
8
bone element
8
embryo
8
skeleton
2
adipose tissue
2
connective tissue
1
brain
Project
367
AMP
76
HPAP
23
T1D
Genome assembly (visualization)
110
GRCh38
60
hg19
Lab
203
AMP-T2D consortium
128
Katalin Susztak, Upenn
76
Klaus Kaestner, Upenn
36
Bing Ren, UCSD
23
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
audit.NOT_COMPLIANT.category!
missing controlled_by
biosample_type!
in vitro differentiated cells
month_released!
November, 2020
BIOSAMPLE
ASSAY
466 results
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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
whole genome sequencing assay
tissue
kidney
49
64
8
6
1
coronary artery
35
islet of Langerhans
6
11
2
1
heart left ventricle
18
left cardiac atrium
18
+ See 21 more…
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
hepatocyte
4
gabaergic neuron
3
+ See 3 more…
cell line
HepG2
9
18
2
1
1
EndoC_BH1
3
2
2
1
H1-hESC
8
HEK293T
2
Synthesized DNA
1
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