Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
DNase-seq
90
ChIP-seq
2
ATAC-seq
Assay category
178
DNA accessibility
90
DNA binding
Target of assay
46
histone
46
histone modification
44
transcription factor
27
broad histone mark
19
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
162
June, 2019
64
November, 2017
26
August, 2017
8
November, 2018
5
October, 2019
2
October, 2017
1
March, 2019
Available data
2311
bam
2103
bigWig
1493
bed narrowPeak
931
tsv
908
bigBed narrowPeak
872
fastq
286
tagAlign
268
bed broadPeak
234
bigBed broadPeak
220
bed bed3+
161
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
18
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
262
Homo sapiens
Biosample type
208
tissue
59
cell line
primary cell
1
in vitro differentiated cells
Organ
68
kidney
61
liver
45
musculature of body
36
limb
34
brain
27
heart
21
pancreas
18
ureter
5
blood vessel
5
vasculature
4
artery
4
connective tissue
adipose tissue
3
eye
2
nerve
1
spleen
Project
268
AMP
Genome assembly (visualization)
251
hg19
233
GRCh38
Lab
266
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
13
inconsistent control read length
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
biosample_type!
primary cell
organ_slims!
adipose tissue
pericardium
BIOSAMPLE
ASSAY
268 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
1
kidney
13
muscle of leg
13
+ See 43 more…
cell line
HepG2
58
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
Download