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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
437
ChIP-seq
184
total RNA-seq
22
ATAC-seq
5
WGBS
4
DNase-seq
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
437
DNA binding
188
Transcription
26
DNA accessibility
6
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
326
transcription factor
107
control
99
histone modification
histone
81
recombinant protein
57
narrow histone mark
56
RNA binding protein
41
broad histone mark
17
chromatin remodeller
2
other context
2
other post-translational modification
Date released
291
November, 2017
167
May, 2020
50
November, 2018
46
December, 2017
40
May, 2022
28
August, 2021
22
August, 2017
8
July, 2019
5
January, 2019
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
1
October, 2019
Available data
581
bam
521
bigWig
409
fastq
347
bed narrowPeak
310
bigBed narrowPeak
169
tsv
47
bed broadPeak
47
bigBed broadPeak
27
tagAlign
7
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
666
Homo sapiens
Biosample type
371
cell line
292
tissue
primary cell
3
in vitro differentiated cells
Organ
666
liver
557
connective tissue
496
pancreas
444
adipose tissue
298
kidney
285
heart
158
bone element
145
blood vessel
145
vasculature
119
artery
91
epithelium
77
brain
73
limb
60
blood
60
bodily fluid
57
musculature of body
54
eye
25
embryo
20
lung
19
nerve
18
spleen
18
ureter
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
666
AMP
Genome assembly (visualization)
522
hg19
450
GRCh38
Lab
598
AMP-T2D consortium
40
Karen Mohlke, UNC
28
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
missing controlled_by
Audit category:
10
inconsistent control read length
2
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
biosample_type!
primary cell
month_released!
October, 2017
target.investigated_as!
histone
BIOSAMPLE
ASSAY
666 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
pCHi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
348
14
1
1
2
2
2
1
tissue
liver
81
167
20
3
2
1
1
1
1
1
right lobe of liver
5
3
1
1
2
2
in vitro differentiated cells
hepatocyte
3
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