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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
41
single cell RNA-seq
7
DNase-seq
3
WGBS
Assay category
67
DNA binding
41
Transcription
7
DNA accessibility
3
DNA methylation
Target of assay
61
transcription factor
21
RNA binding protein
15
recombinant protein
6
control
5
chromatin remodeller
3
other context
3
other post-translational modification
Date released
683
February, 2021
396
November, 2017
341
May, 2020
338
May, 2021
315
August, 2021
296
October, 2019
214
June, 2019
206
August, 2017
149
February, 2023
118
May, 2019
102
July, 2019
96
May, 2022
90
December, 2017
80
April, 2019
78
November, 2018
47
September, 2023
46
March, 2020
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
15
May, 2023
14
October, 2017
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2021
7
January, 2018
6
November, 2019
6
November, 2020
3
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
100
fastq
77
bam
71
bigWig
68
bed narrowPeak
68
bigBed narrowPeak
19
zippedFastqFolder
7
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
csv
Organism
118
Homo sapiens
Biosample type
58
cell line
41
primary cell
19
tissue
Organ
50
liver
pancreas
19
epithelium
15
blood
15
bodily fluid
9
spleen
2
brain
1
adipose tissue
1
connective tissue
Project
78
AMP
40
HPAP
Genome assembly (visualization)
71
GRCh38
66
hg19
Lab
78
AMP-T2D consortium
40
Klaus Kaestner, Upenn
Audit category:
missing controlled_by
Audit category:
3
inconsistent control read length
2
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
biosample_type!
stem cell
organ_slims!
pancreas
BIOSAMPLE
ASSAY
118 results
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Clear Filters
ChIP-seq
single cell RNA-seq
DNase-seq
WGBS
cell line
HepG2
42
1
GM12878
15
primary cell
Langerhans cell
40
pancreatic cell
1
tissue
spleen
6
1
2
liver
4
2
brain
2
omental fat pad
1
right lobe of liver
1
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