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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
ChIP-seq
5
DNase-seq
3
single cell RNA-seq
Assay category
9
DNA binding
5
DNA accessibility
3
Transcription
Target of assay
6
control
3
RNA binding protein
3
histone
3
histone modification
3
narrow histone mark
3
transcription factor
Date released
9
November, 2017
5
June, 2019
3
July, 2019
Available data
20
bigWig
17
bam
11
bed broadPeak
11
bed narrowPeak
11
bigBed broadPeak
11
bigBed narrowPeak
9
fastq
8
bed bed3+
hdf5
3
tsv
bed bedMethyl
1
bigBed bedMethyl
Organism
17
Homo sapiens
Biosample type
tissue
17
primary cell
Organ
480
epithelium
414
liver
396
pancreas
130
connective tissue
100
vasculature
95
blood vessel
79
heart
69
blood
69
bodily fluid
68
artery
52
kidney
36
embryo
22
vein
17
brain
13
musculature of body
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
17
AMP
Genome assembly (visualization)
17
hg19
14
GRCh38
Lab
17
AMP-T2D consortium
audit.NOT_COMPLIANT.category!
missing controlled_by
biosample_type!
tissue
files.file_type!
bed bedMethyl
hdf5
BIOSAMPLE
ASSAY
17 results
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ChIP-seq
DNase-seq
single cell RNA-seq
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
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