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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
650
ChIP-seq
254
total RNA-seq
100
single cell RNA-seq
94
ATAC-seq
31
DNase-seq
2
small RNA-seq
1
FAIRE-seq
1
WGBS
1
pCHi-C
Assay category
650
DNA binding
356
Transcription
126
DNA accessibility
1
DNA methylation
Target of assay
347
transcription factor
193
histone
193
histone modification
108
control
97
broad histone mark
96
narrow histone mark
88
recombinant protein
72
RNA binding protein
25
chromatin remodeller
2
other context
2
other post-translational modification
Date released
313
November, 2017
154
May, 2021
98
February, 2021
90
May, 2020
60
October, 2019
58
November, 2018
55
June, 2019
48
July, 2018
46
August, 2017
43
April, 2018
40
September, 2018
27
December, 2018
23
January, 2019
18
July, 2019
15
November, 2019
12
August, 2021
6
November, 2020
5
December, 2019
5
March, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
June, 2018
2
October, 2018
Available data
1134
bam
1079
bigWig
779
fastq
655
bed narrowPeak
452
bigBed narrowPeak
389
tsv
153
zippedFastqFolder
120
tagAlign
108
bed broadPeak
108
bigBed broadPeak
40
bed bed3+
11
bed bedMethyl
11
bigBed bedMethyl
8
hic
6
bedpe bed3+
5
hdf5
4
tar
3
cool
2
bed bed3
2
csv
1
txt
1
vcf
Organism
1134
Homo sapiens
Biosample type
1882
tissue
569
cell line
565
primary cell
285
in vitro differentiated cells
3
stem cell
Organ
365
liver
272
epithelium
213
pancreas
98
vasculature
93
blood vessel
78
heart
68
artery
60
blood
60
bodily fluid
46
kidney
36
connective tissue
20
vein
17
brain
13
musculature of body
8
embryo
4
eye
2
adipose tissue
1
pericardium
Project
950
AMP
184
T1D
Genome assembly (visualization)
1027
hg19
939
GRCh38
Lab
954
AMP-T2D consortium
180
Kyle Gaulton, UCSD
Audit category:
107
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
missing controlled_by
Audit category:
26
inconsistent control read length
3
inconsistent control run_type
2
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
1134 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
FAIRE-seq
WGBS
pCHi-C
cell line
HepG2
346
5
1
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
EndoC_BH1
15
33
1
Panc1
13
1
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primary cell
monocyte
84
53
15
pancreatic beta cell
13
10
12
7
pancreatic alpha cell
13
10
12
6
pancreatic acinar cell
4
12
5
endothelial cell of umbilical vein
17
2
1
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