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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ChIP-seq
Assay category
63
DNA binding
Target of assay
349
transcription factor
88
recombinant protein
83
control
63
RNA binding protein
37
histone
37
histone modification
24
chromatin remodeller
19
broad histone mark
18
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
32
November, 2017
21
November, 2018
6
January, 2019
2
December, 2018
1
August, 2021
1
November, 2019
Available data
62
bam
61
bed narrowPeak
61
bigWig
61
fastq
59
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
1
tar
Organism
63
Homo sapiens
Biosample type
63
cell line
27
tissue
11
in vitro differentiated cells
10
primary cell
Organ
52
liver
10
blood
10
bodily fluid
1
epithelium
1
pancreas
Project
63
AMP
Genome assembly (visualization)
60
hg19
57
GRCh38
Lab
62
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bedpe bed3+
month_released!
August, 2018
BIOSAMPLE
ASSAY
63 results
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ChIP-seq
cell line
HepG2
52
GM12878
10
EndoC_BH1
1
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