Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
392
ChIP-seq
100
total RNA-seq
3
ATAC-seq
1
DNase-seq
1
Hi-C
1
WGBS
Assay category
392
DNA binding
100
Transcription
4
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
338
transcription factor
81
recombinant protein
61
RNA binding protein
36
histone
36
histone modification
24
chromatin remodeller
18
broad histone mark
18
narrow histone mark
13
control
2
other context
2
other post-translational modification
Date released
258
November, 2017
83
February, 2021
55
November, 2018
27
December, 2018
22
August, 2021
20
January, 2019
12
November, 2019
8
October, 2019
7
March, 2020
5
May, 2021
1
January, 2018
Available data
554
bam
498
bigWig
414
fastq
384
bed narrowPeak
342
bigBed narrowPeak
113
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
498
Homo sapiens
Biosample type
1656
tissue
541
primary cell
498
cell line
254
in vitro differentiated cells
3
stem cell
Organ
320
liver
56
artery
56
blood vessel
56
heart
56
pancreas
56
vasculature
55
blood
55
bodily fluid
50
epithelium
kidney
8
embryo
Project
494
AMP
4
T1D
Genome assembly (visualization)
493
hg19
437
GRCh38
Lab
484
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
48
inconsistent ontology term
1
inconsistent control
Audit category:
missing controlled_by
Audit category:
21
inconsistent control read length
2
inconsistent control run_type
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
kidney
thymus
BIOSAMPLE
ASSAY
498 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
314
5
1
smooth muscle cell of the coronary artery
4
52
GM12878
54
1
EndoC_BH1
13
33
2
H1-hESC
8
+ See 3 more…
See all biosamples
Download