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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
440
ChIP-seq
103
total RNA-seq
28
ATAC-seq
6
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
Hi-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
Assay category
440
DNA binding
103
Transcription
30
DNA accessibility
2
3D chromatin structure
1
DNA methylation
Target of assay
337
transcription factor
88
recombinant protein
74
control
61
RNA binding protein
24
chromatin remodeller
24
histone
24
histone modification
12
broad histone mark
12
narrow histone mark
2
other context
2
other post-translational modification
Date released
305
November, 2017
96
February, 2021
58
November, 2018
30
October, 2019
28
December, 2018
23
January, 2019
21
May, 2021
November, 2019
11
March, 2020
10
August, 2021
6
February, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
554
bam
484
bigWig
414
fastq
366
bed narrowPeak
343
bigBed narrowPeak
109
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
Organism
589
Homo sapiens
Biosample type
2411
tissue
719
primary cell
591
cell line
376
in vitro differentiated cells
8
stem cell
Organ
357
liver
70
pancreas
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
57
epithelium
17
kidney
8
embryo
1
mammary gland
Project
582
AMP
9
T1D
Genome assembly (visualization)
489
hg19
446
GRCh38
Lab
586
AMP-T2D consortium
34
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
69
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
missing controlled_by
Audit category:
21
inconsistent control read length
2
inconsistent control run_type
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
November, 2019
BIOSAMPLE
ASSAY
591 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
Capture-C
DNase-seq
Hi-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
cell line
HepG2
347
5
1
2
1
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
EndoC_BH1
2
32
18
3
2
2
1
Panc1
13
1
1
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