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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
Assay category
24
DNA binding
Target of assay
349
transcription factor
88
recombinant protein
83
control
63
RNA binding protein
37
histone
37
histone modification
24
chromatin remodeller
19
broad histone mark
18
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
11
November, 2017
6
January, 2019
5
November, 2018
2
December, 2018
Available data
24
bam
24
bed narrowPeak
24
bigBed narrowPeak
24
bigWig
24
fastq
4
bed broadPeak
4
bigBed broadPeak
Organism
24
Homo sapiens
Biosample type
24
cell line
3
in vitro differentiated cells
2
tissue
1
primary cell
Organ
14
liver
10
blood
10
bodily fluid
Project
24
AMP
Genome assembly (visualization)
24
GRCh38
24
hg19
Lab
24
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
2
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
April, 2019
BIOSAMPLE
ASSAY
24 results
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ChIP-seq
cell line
HepG2
14
GM12878
10
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