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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
168
ChIP-seq
121
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
168
DNA binding
123
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
95
histone
95
histone modification
48
broad histone mark
46
narrow histone mark
44
transcription factor
29
control
11
RNA binding protein
3
chromatin remodeller
Date released
132
May, 2021
63
August, 2017
42
August, 2021
42
December, 2017
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
246
bam
223
bigWig
116
bed narrowPeak
116
tsv
96
fastq
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
349
Homo sapiens
Biosample type
tissue
1034
primary cell
648
cell line
349
in vitro differentiated cells
10
stem cell
Organ
92
connective tissue
24
epithelium
15
embryo
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
349
AMP
Genome assembly (visualization)
261
hg19
229
GRCh38
4
hg18
Lab
295
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
115
inconsistent ontology term
2
audit script error
Audit category:
missing controlled_by
Audit category:
15
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
biosample_type!
tissue
files.file_type!
bed bedMethyl
month_released!
February, 2018
BIOSAMPLE
ASSAY
349 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
62
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
37
5
6
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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