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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1028
total RNA-seq
804
ChIP-seq
81
ATAC-seq
17
WGBS
16
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
2
DNase-seq
Assay category
1050
Transcription
804
DNA binding
87
DNA accessibility
17
DNA methylation
Target of assay
521
histone modification
520
histone
272
narrow histone mark
247
broad histone mark
189
control
94
transcription factor
27
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
Date released
474
February, 2021
193
May, 2020
186
October, 2019
178
August, 2017
123
May, 2021
116
July, 2018
115
May, 2019
79
April, 2019
78
December, 2017
74
October, 2018
69
November, 2017
64
July, 2019
44
November, 2019
39
February, 2018
37
August, 2021
24
May, 2022
17
November, 2018
12
October, 2017
11
March, 2020
7
December, 2018
7
January, 2019
6
April, 2018
4
September, 2017
1
March, 2019
Available data
2167
bam
2001
bigWig
1207
tsv
1112
bed narrowPeak
575
bigBed narrowPeak
486
fastq
274
tagAlign
bed bed3+
212
bed broadPeak
177
bigBed broadPeak
160
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
1951
Homo sapiens
Biosample type
1692
tissue
568
cell line
534
primary cell
266
in vitro differentiated cells
Organ
531
connective tissue
426
adipose tissue
405
pancreas
297
liver
196
brain
106
heart
82
blood vessel
82
vasculature
78
limb
66
bone element
40
nerve
30
artery
30
kidney
24
embryo
24
epithelium
23
spleen
12
musculature of body
8
skeleton
1
pituitary gland
Project
1956
AMP
2
T1D
Genome assembly (visualization)
1729
GRCh38
1689
hg19
Lab
1933
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
104
inconsistent ontology term
27
inconsistent control
Audit category:
missing controlled_by
Audit category:
15
inconsistent control read length
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
1958 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
DNase-seq
tissue
adipose tissue
381
2
2
islet of Langerhans
266
9
38
6
1
1
liver
147
119
1
bone tissue
58
body of pancreas
2
35
4
2
2
+ See 119 more…
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
41
1
neural progenitor cell
7
20
10
cardiac precursors (cardiac muscle cell)
19
1
pancreatic endoderm
4
14
+ See 24 more…
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