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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1101
total RNA-seq
923
ChIP-seq
188
ATAC-seq
85
RNA microarray
84
DNase-seq
27
pCHi-C
25
single cell RNA-seq
22
snATAC-seq
19
WGBS
16
Hi-C
14
small RNA-seq
9
RRBS
4
GRO-seq
4
MeRIP-seq
3
FAIRE-seq
2
Capture-C
Assay category
1140
Transcription
923
DNA binding
297
DNA accessibility
28
DNA methylation
16
3D chromatin structure
Target of assay
616
histone modification
615
histone
326
narrow histone mark
288
broad histone mark
202
control
107
transcription factor
27
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
563
February, 2021
325
August, 2017
238
October, 2019
193
May, 2020
169
May, 2021
120
July, 2018
94
May, 2019
90
December, 2017
82
November, 2017
75
February, 2023
74
October, 2018
68
June, 2019
66
May, 2022
53
July, 2019
51
August, 2021
45
November, 2019
41
March, 2020
39
February, 2018
26
November, 2018
22
February, 2020
19
April, 2020
19
October, 2017
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
January, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
May, 2023
Available data
1936
bam
1752
bigWig
1083
tsv
786
bed narrowPeak
486
fastq
400
bigBed narrowPeak
274
tagAlign
121
bed bed3+
117
bed broadPeak
98
txt
82
bigBed broadPeak
17
bed bedMethyl
17
bigBed bedMethyl
14
bedpe bed3+
11
hic
10
bed bed3
7
bed bedgraph
2
ibed
1
bedpe
1
csv
1
tagAlign bed3+
Organism
2517
Homo sapiens
Biosample type
2139
tissue
995
primary cell
564
cell line
387
in vitro differentiated cells
10
stem cell
Organ
627
connective tissue
498
pancreas
477
adipose tissue
376
liver
heart
kidney
261
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
39
epithelium
28
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2476
AMP
31
T1D
19
LungMap
Genome assembly (visualization)
1816
hg19
1737
GRCh38
4
hg18
Lab
2349
AMP-T2D consortium
99
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
206
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
missing controlled_by
Audit category:
23
inconsistent control read length
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
heart
kidney
BIOSAMPLE
ASSAY
2526 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
RNA microarray
DNase-seq
pCHi-C
single cell RNA-seq
snATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
GRO-seq
MeRIP-seq
FAIRE-seq
Capture-C
tissue
islet of Langerhans
292
61
68
1
4
6
7
3
1
4
1
adipose tissue
382
2
3
1
3
liver
167
145
20
2
1
1
3
1
1
1
bone element
84
bone tissue
58
+ See 145 more…
in vitro differentiated cells
adipocyte
5
62
8
1
1
cardiomyocytes
59
3
embryonic stem cell
7
40
6
1
neural progenitor cell
7
21
10
pancreatic endoderm
4
17
1
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