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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
ChIP-seq
Assay category
50
DNA binding
Target of assay
103
histone
103
histone modification
52
broad histone mark
50
narrow histone mark
38
transcription factor
32
control
11
RNA binding protein
3
chromatin remodeller
Date released
16
August, 2017
11
May, 2021
8
December, 2017
8
February, 2018
7
August, 2021
Available data
40
bam
40
bed narrowPeak
40
bigWig
32
fastq
12
tagAlign
5
bigBed narrowPeak
bed bed3+
Organism
50
Homo sapiens
Biosample type
302
tissue
90
primary cell
50
in vitro differentiated cells
18
cell line
Organ
16
connective tissue
8
epithelium
6
embryo
5
liver
1
pancreas
Project
50
AMP
Genome assembly (visualization)
36
GRCh38
36
hg19
Lab
40
AMP-T2D consortium
10
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
2
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bed bed3+
organ_slims!
limb
BIOSAMPLE
ASSAY
50 results
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ChIP-seq
in vitro differentiated cells
adipocyte
16
embryonic stem cell
11
neural progenitor cell
7
hepatocyte
5
pancreatic endoderm
4
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