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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
total RNA-seq
37
ChIP-seq
15
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
Assay category
126
Transcription
37
DNA binding
15
DNA accessibility
4
3D chromatin structure
Target of assay
25
control
12
histone
12
histone modification
8
broad histone mark
4
narrow histone mark
Date released
80
May, 2021
26
February, 2021
23
February, 2018
20
August, 2017
August, 2021
13
February, 2023
8
December, 2017
8
March, 2020
6
October, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
248
bam
224
bigWig
135
fastq
124
tsv
bed narrowPeak
23
bed bed3+
20
tagAlign
17
bigBed narrowPeak
7
bedpe bed3+
5
bed bed3
4
bed bedgraph
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
191
Homo sapiens
Biosample type
1462
tissue
330
primary cell
214
cell line
191
in vitro differentiated cells
6
stem cell
Organ
45
connective tissue
14
embryo
6
epithelium
1
adipose tissue
1
heart
1
liver
1
pancreas
Project
191
AMP
Genome assembly (visualization)
146
hg19
125
GRCh38
4
hg18
Lab
191
AMP-T2D consortium
47
Kyle Gaulton, UCSD
1
Struan F.A. Grant, CHOP
Audit category:
102
inconsistent ontology term
2
audit script error
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bed narrowPeak
month_released!
August, 2021
BIOSAMPLE
ASSAY
191 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
adipocyte
5
20
7
cardiac precursors (cardiac muscle cell)
19
1
pancreatic endoderm
4
5
1
cardiomyocytes (cardiac muscle cell)
3
2
2
2
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