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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
112
ChIP-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
138
Transcription
112
DNA binding
43
DNA accessibility
4
3D chromatin structure
Target of assay
85
histone
85
histone modification
42
broad histone mark
42
narrow histone mark
transcription factor
27
control
11
RNA binding protein
3
chromatin remodeller
Date released
114
May, 2021
39
February, 2018
32
August, 2017
31
December, 2017
26
February, 2021
22
August, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
253
bam
222
bigWig
131
tsv
107
fastq
100
bed narrowPeak
tagAlign
19
bed bed3+
15
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
308
Homo sapiens
Biosample type
2299
tissue
934
primary cell
308
in vitro differentiated cells
285
cell line
10
stem cell
Organ
61
connective tissue
25
embryo
19
epithelium
13
liver
1
adipose tissue
1
heart
Project
308
AMP
Genome assembly (visualization)
247
hg19
214
GRCh38
4
hg18
Lab
266
AMP-T2D consortium
35
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
112
inconsistent ontology term
2
audit script error
Audit category:
missing controlled_by
Audit category:
7
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
tagAlign
lab.title!
Katalin Susztak, Upenn
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
308 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
adipocyte
5
31
8
1
1
embryonic stem cell
7
28
6
1
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
4
14
1
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