Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
total RNA-seq
111
ChIP-seq
32
ATAC-seq
4
GRO-seq
4
Hi-C
4
pCHi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
133
Transcription
111
DNA binding
33
DNA accessibility
4
3D chromatin structure
Target of assay
91
histone
91
histone modification
46
broad histone mark
narrow histone mark
32
control
32
transcription factor
6
RNA binding protein
3
chromatin remodeller
Date released
84
May, 2021
47
August, 2017
31
August, 2021
31
February, 2018
30
December, 2017
26
February, 2021
13
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
Available data
245
bam
204
bigWig
131
tsv
102
fastq
88
bed narrowPeak
28
tagAlign
19
bed bed3+
12
bigBed narrowPeak
6
bedpe bed3+
5
bed bed3
4
bed bedgraph
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
289
Homo sapiens
Biosample type
1630
tissue
586
cell line
436
primary cell
289
in vitro differentiated cells
7
stem cell
Organ
72
connective tissue
21
embryo
16
epithelium
10
liver
2
pancreas
adipose tissue
1
heart
Project
289
AMP
Genome assembly (visualization)
240
hg19
220
GRCh38
4
hg18
Lab
289
AMP-T2D consortium
37
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
112
inconsistent ontology term
2
audit script error
Audit category:
missing controlled_by
Audit category:
15
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
adipose tissue
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
289 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
Hi-C
pCHi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
5
46
7
1
neural progenitor cell
7
14
10
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
4
12
1
+ See 27 more…
See all biosamples
Download