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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
111
ChIP-seq
Assay category
111
DNA binding
Target of assay
111
histone
111
histone modification
56
broad histone mark
54
narrow histone mark
44
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
37
August, 2017
23
December, 2017
21
May, 2021
16
February, 2018
14
August, 2021
Available data
78
bam
78
bed narrowPeak
78
bigWig
64
fastq
26
tagAlign
12
bigBed narrowPeak
8
bed bed3+
Organism
111
Homo sapiens
Biosample type
617
tissue
193
primary cell
111
in vitro differentiated cells
36
cell line
2
stem cell
Organ
37
connective tissue
15
epithelium
12
liver
11
embryo
1
pancreas
Project
111
AMP
Genome assembly (visualization)
78
GRCh38
77
hg19
Lab
91
AMP-T2D consortium
20
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
7
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
March, 2020
organ_slims!
stomach
BIOSAMPLE
ASSAY
111 results
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ChIP-seq
in vitro differentiated cells
adipocyte
37
embryonic stem cell
22
neural progenitor cell
14
hepatocyte
12
pancreatic endoderm
9
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