Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
81
ChIP-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
138
Transcription
81
DNA binding
43
DNA accessibility
4
3D chromatin structure
Target of assay
histone
111
histone modification
56
broad histone mark
54
narrow histone mark
44
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
111
May, 2021
28
August, 2021
26
August, 2017
26
February, 2021
23
February, 2018
19
December, 2017
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
207
bam
176
bigWig
131
tsv
71
fastq
54
bed narrowPeak
17
bed bed3+
14
tagAlign
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
5
bigBed narrowPeak
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
277
Homo sapiens
Biosample type
2132
tissue
810
primary cell
612
cell line
277
in vitro differentiated cells
8
stem cell
Organ
55
connective tissue
17
embryo
9
epithelium
3
liver
2
pancreas
1
adipose tissue
1
heart
Project
277
AMP
Genome assembly (visualization)
215
hg19
182
GRCh38
4
hg18
Lab
243
AMP-T2D consortium
27
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
113
inconsistent ontology term
2
audit script error
Audit category:
missing controlled_by
Audit category:
10
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
September, 2018
target.investigated_as!
histone
BIOSAMPLE
ASSAY
277 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
5
25
8
1
1
embryonic stem cell
7
18
6
1
neural progenitor cell
7
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
+ See 31 more…
See all biosamples
Download