Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1278
total RNA-seq
1079
ChIP-seq
460
ATAC-seq
358
single cell RNA-seq
209
DNase-seq
87
RNA microarray
74
WGBS
74
snATAC-seq
42
pCHi-C
26
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNAme array
Assay category
1654
Transcription
1079
DNA binding
748
DNA accessibility
96
DNA methylation
26
3D chromatin structure
Target of assay
813
histone modification
812
histone
412
narrow histone mark
400
broad histone mark
222
control
86
transcription factor
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
593
February, 2021
340
May, 2020
306
August, 2017
276
October, 2019
246
May, 2021
233
August, 2021
214
June, 2019
200
May, 2022
183
February, 2023
168
July, 2018
115
May, 2019
108
July, 2019
88
November, 2017
76
April, 2019
65
October, 2018
59
September, 2020
49
April, 2018
47
September, 2023
46
December, 2017
41
March, 2020
41
September, 2018
40
November, 2019
35
May, 2024
27
November, 2018
25
February, 2020
April, 2020
19
October, 2017
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
7
August, 2020
7
December, 2018
7
January, 2019
5
March, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
January, 2018
1
August, 2022
1
March, 2023
Available data
2415
bam
2280
bigWig
1346
tsv
1207
bed narrowPeak
697
fastq
637
bigBed narrowPeak
334
tagAlign
255
bed broadPeak
227
bed bed3+
220
bigBed broadPeak
157
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
17
hic
14
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
Organism
3731
Homo sapiens
Biosample type
2705
tissue
1034
primary cell
586
cell line
377
in vitro differentiated cells
10
stem cell
Organ
790
pancreas
568
connective tissue
473
adipose tissue
395
epithelium
373
liver
332
kidney
315
heart
279
brain
165
vasculature
160
blood vessel
159
bone element
122
limb
96
musculature of body
74
artery
60
eye
43
nerve
25
spleen
22
vein
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
3132
AMP
324
HPAP
235
T1D
47
KPMP
1
ITG
Genome assembly (visualization)
2291
GRCh38
2283
hg19
Lab
2847
AMP-T2D consortium
324
Klaus Kaestner, Upenn
291
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
142
inconsistent ontology term
40
audit script error
27
inconsistent control
Audit category:
missing controlled_by
Audit category:
11
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
April, 2020
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
3739 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
DNAme array
tissue
islet of Langerhans
292
60
68
6
1
7
4
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
144
20
1
2
3
1
1
1
1
kidney
49
26
75
64
13
6
1
1
1
bone element
84
+ See 175 more…
primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
52
13
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
21
13
23
12
16
1
CD8-positive, alpha-beta T cell
4
33
2
1
+ See 93 more…
See all biosamples
Download