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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
97
total RNA-seq
77
ATAC-seq
54
single cell RNA-seq
37
ChIP-seq
35
snATAC-seq
16
pCHi-C
10
Hi-C
10
RRBS
6
WGBS
2
DNase-seq
1
DNAme array
Assay category
151
Transcription
114
DNA accessibility
37
DNA binding
17
DNA methylation
10
3D chromatin structure
Target of assay
34
histone
34
histone modification
22
broad histone mark
12
narrow histone mark
3
control
Date released
May, 2022
88
February, 2023
59
September, 2020
57
May, 2020
57
May, 2021
45
February, 2021
13
July, 2019
8
January, 2021
7
August, 2020
3
October, 2019
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
569
bigWig
bam
365
fastq
270
tsv
263
bed narrowPeak
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
19
zippedFastqFolder
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
345
Homo sapiens
Biosample type
827
tissue
345
primary cell
103
in vitro differentiated cells
79
cell line
7
stem cell
Organ
84
epithelium
72
pancreas
8
blood
8
bodily fluid
5
kidney
5
vasculature
4
blood vessel
4
brain
3
connective tissue
2
liver
2
vein
1
bone element
1
bone marrow
1
eye
1
heart
1
musculature of body
Project
190
HPAP
130
AMP
24
T1D
1
ITG
Genome assembly (visualization)
54
hg19
11
GRCh38
Lab
190
Klaus Kaestner, Upenn
95
AMP-T2D consortium
59
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
9
inconsistent ontology term
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bam
month_released!
May, 2022
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
345 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
DNase-seq
DNAme array
primary cell
Langerhans cell
52
27
pancreatic alpha cell
42
7
1
6
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
2
1
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