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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
ChIP-seq
150
total RNA-seq
97
single cell RNA-seq
84
ATAC-seq
24
DNase-seq
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
249
Transcription
189
DNA binding
109
DNA accessibility
Target of assay
156
histone
156
histone modification
79
broad histone mark
77
narrow histone mark
26
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
149
May, 2021
90
May, 2020
50
June, 2019
48
July, 2018
46
August, 2017
43
April, 2018
40
September, 2018
31
October, 2019
15
July, 2019
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
Available data
549
bigWig
548
bam
356
fastq
267
tsv
252
bed narrowPeak
153
zippedFastqFolder
100
tagAlign
98
bigBed narrowPeak
38
bed broadPeak
38
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
hdf5
1
tar
Organism
548
Homo sapiens
Biosample type
1659
tissue
569
cell line
548
primary cell
285
in vitro differentiated cells
3
stem cell
Organ
221
epithelium
150
pancreas
36
connective tissue
32
vasculature
31
kidney
27
blood vessel
20
vein
brain
13
musculature of body
12
heart
12
liver
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
368
AMP
180
T1D
Genome assembly (visualization)
513
hg19
467
GRCh38
Lab
368
AMP-T2D consortium
180
Kyle Gaulton, UCSD
Audit category:
45
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
brain
BIOSAMPLE
ASSAY
548 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
84
53
15
pancreatic beta cell
13
10
12
7
pancreatic alpha cell
13
10
12
6
pancreatic acinar cell
4
12
5
endothelial cell of umbilical vein
17
2
1
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