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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
ChIP-seq
150
total RNA-seq
100
single cell RNA-seq
84
ATAC-seq
29
DNase-seq
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
252
Transcription
188
DNA binding
114
DNA accessibility
Target of assay
159
histone
159
histone modification
80
narrow histone mark
79
broad histone mark
32
control
10
RNA binding protein
transcription factor
1
chromatin remodeller
Date released
149
May, 2021
90
May, 2020
51
June, 2019
48
July, 2018
44
August, 2017
43
April, 2018
40
September, 2018
31
October, 2019
18
July, 2019
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
4
May, 2019
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
Available data
559
bigWig
555
bam
360
fastq
270
tsv
253
bed narrowPeak
153
zippedFastqFolder
100
tagAlign
99
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
555
Homo sapiens
Biosample type
1811
tissue
555
primary cell
253
in vitro differentiated cells
232
cell line
3
stem cell
Organ
216
epithelium
150
pancreas
35
connective tissue
30
vasculature
29
kidney
26
blood vessel
20
vein
14
brain
13
musculature of body
12
liver
11
heart
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
375
AMP
180
T1D
Genome assembly (visualization)
520
hg19
472
GRCh38
Lab
375
AMP-T2D consortium
180
Kyle Gaulton, UCSD
Audit category:
42
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
555 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
84
53
15
pancreatic beta cell
13
10
12
7
pancreatic alpha cell
13
10
12
6
pancreatic acinar cell
4
12
5
endothelial cell of umbilical vein
17
2
1
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