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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
ChIP-seq
39
ATAC-seq
29
DNase-seq
1
FAIRE-seq
Assay category
194
DNA binding
69
DNA accessibility
Target of assay
184
histone
184
histone modification
95
broad histone mark
89
narrow histone mark
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
127
May, 2021
47
June, 2019
33
August, 2017
21
October, 2019
14
September, 2018
6
November, 2017
5
September, 2017
4
May, 2019
3
August, 2021
2
November, 2020
1
February, 2021
Available data
569
bigWig
565
bam
365
fastq
270
tsv
263
bed narrowPeak
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
0
txt
Organism
263
Homo sapiens
Biosample type
1137
tissue
392
cell line
263
primary cell
133
in vitro differentiated cells
2
stem cell
Organ
85
epithelium
36
pancreas
22
kidney
21
vasculature
17
blood vessel
17
connective tissue
13
vein
11
brain
9
musculature of body
6
heart
6
liver
3
eye
Project
179
AMP
84
T1D
Genome assembly (visualization)
256
hg19
229
GRCh38
Lab
149
AMP-T2D consortium
114
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
October, 2022
BIOSAMPLE
ASSAY
263 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
monocyte
84
13
CD8-positive, alpha-beta T cell
30
skeletal muscle myoblast
14
2
pancreatic beta cell
7
7
endothelial cell of umbilical vein
10
2
1
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