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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
ChIP-seq
39
ATAC-seq
29
DNase-seq
1
FAIRE-seq
Assay category
184
DNA binding
69
DNA accessibility
Target of assay
184
histone
184
histone modification
95
broad histone mark
89
narrow histone mark
10
RNA binding protein
transcription factor
1
chromatin remodeller
Date released
127
May, 2021
43
June, 2019
31
August, 2017
21
October, 2019
14
September, 2018
5
September, 2017
3
August, 2021
3
May, 2019
3
November, 2017
2
November, 2020
1
February, 2021
Available data
559
bigWig
555
bam
360
fastq
270
tsv
253
bed narrowPeak
153
zippedFastqFolder
100
tagAlign
99
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
253
Homo sapiens
Biosample type
905
tissue
253
primary cell
100
in vitro differentiated cells
51
cell line
2
stem cell
Organ
80
epithelium
36
pancreas
20
kidney
19
vasculature
16
blood vessel
16
connective tissue
13
vein
9
musculature of body
8
brain
6
liver
5
heart
2
eye
Project
169
AMP
84
T1D
Genome assembly (visualization)
246
hg19
220
GRCh38
Lab
139
AMP-T2D consortium
114
Kyle Gaulton, UCSD
Audit category:
22
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
253 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
monocyte
84
13
CD8-positive, alpha-beta T cell
30
pancreatic beta cell
7
7
skeletal muscle myoblast
12
2
endothelial cell of umbilical vein
10
2
1
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