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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
4
DNase-seq
4
Hi-C
2
total RNA-seq
1
FAIRE-seq
Assay category
20
DNA binding
5
DNA accessibility
4
3D chromatin structure
2
Transcription
Target of assay
16
histone
16
histone modification
9
broad histone mark
7
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
21
October, 2019
4
July, 2019
3
November, 2017
2
June, 2019
1
March, 2020
Available data
27
bam
24
bigWig
17
bed narrowPeak
17
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
3
fastq
2
hdf5
2
hic
2
tsv
1
bedpe bed3+
1
tar
Organism
31
Homo sapiens
Biosample type
133
tissue
66
cell line
31
primary cell
Organ
385
epithelium
302
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
31
AMP
Genome assembly (visualization)
25
hg19
18
GRCh38
Lab
31
AMP-T2D consortium
Audit category:
1
audit script error
audit.NOT_COMPLIANT.category!
missing controlled_by
lab.title!
Maike Sander, UCSD
BIOSAMPLE
ASSAY
31 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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