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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
245
total RNA-seq
206
ChIP-seq
193
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
27
DNase-seq
17
pCHi-C
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
434
Transcription
276
DNA accessibility
206
DNA binding
58
DNA methylation
6
3D chromatin structure
Target of assay
177
histone
177
histone modification
92
broad histone mark
85
narrow histone mark
32
control
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
59
September, 2020
49
June, 2019
48
February, 2021
48
July, 2018
45
August, 2017
43
April, 2018
41
September, 2018
27
July, 2019
13
October, 2019
8
January, 2021
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
4
May, 2019
4
November, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
529
bam
529
bigWig
351
fastq
268
tsv
237
bed narrowPeak
153
zippedFastqFolder
100
tagAlign
83
bigBed narrowPeak
37
bed broadPeak
37
bigBed broadPeak
31
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
997
Homo sapiens
Biosample type
2594
tissue
997
primary cell
520
cell line
377
in vitro differentiated cells
10
stem cell
Organ
373
epithelium
295
pancreas
38
connective tissue
35
vasculature
34
kidney
blood vessel
22
vein
18
brain
14
liver
14
musculature of body
12
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
475
AMP
317
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
550
hg19
459
GRCh38
Lab
440
AMP-T2D consortium
317
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
51
inconsistent ontology term
30
audit script error
Audit category:
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
August, 2020
organ_slims!
blood vessel
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
997 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
52
13
30
12
31
1
Langerhans cell
85
48
pancreatic beta cell
21
13
21
12
16
1
CD8-positive, alpha-beta T cell
4
33
2
1
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