Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
245
total RNA-seq
209
ChIP-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
27
DNase-seq
17
pCHi-C
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
434
Transcription
283
DNA accessibility
209
DNA binding
58
DNA methylation
6
3D chromatin structure
Target of assay
175
histone
175
histone modification
92
broad histone mark
83
narrow histone mark
30
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
59
September, 2020
53
June, 2019
48
February, 2021
48
July, 2018
47
August, 2017
43
April, 2018
41
September, 2018
27
July, 2019
13
October, 2019
8
January, 2021
7
August, 2020
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
539
bigWig
532
bam
356
fastq
268
tsv
242
bed narrowPeak
153
zippedFastqFolder
100
tagAlign
88
bigBed narrowPeak
37
bed broadPeak
37
bigBed broadPeak
31
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
1007
Homo sapiens
Biosample type
2527
tissue
1007
primary cell
388
in vitro differentiated cells
274
cell line
8
stem cell
Organ
379
epithelium
302
pancreas
39
connective tissue
36
kidney
31
vasculature
blood vessel
22
vein
14
liver
14
musculature of body
13
heart
12
brain
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
478
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
553
hg19
470
GRCh38
Lab
443
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
54
inconsistent ontology term
30
audit script error
Audit category:
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
November, 2017
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
1007 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
52
13
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
21
13
23
12
16
1
CD8-positive, alpha-beta T cell
4
33
2
1
+ See 87 more…
See all biosamples
Download