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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
817
ChIP-seq
557
total RNA-seq
226
ATAC-seq
180
single cell RNA-seq
173
DNase-seq
86
RNA microarray
28
snATAC-seq
21
WGBS
20
pCHi-C
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
817
DNA binding
751
Transcription
431
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
585
histone modification
584
histone
305
narrow histone mark
279
broad histone mark
163
control
71
transcription factor
22
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
228
August, 2021
219
October, 2019
217
August, 2017
193
May, 2020
159
June, 2019
120
July, 2018
115
May, 2019
101
February, 2021
82
November, 2017
80
April, 2019
67
July, 2019
66
May, 2022
63
February, 2023
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
March, 2020
39
November, 2019
25
November, 2018
22
February, 2020
19
April, 2020
18
October, 2017
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1393
bam
1275
bigWig
937
bed narrowPeak
614
tsv
545
bigBed narrowPeak
320
fastq
226
tagAlign
205
bed broadPeak
186
bed bed3+
171
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2152
Homo sapiens
Biosample type
2160
tissue
1000
primary cell
649
cell line
in vitro differentiated cells
9
stem cell
Organ
connective tissue
495
pancreas
476
adipose tissue
361
liver
313
heart
299
kidney
261
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2063
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1363
GRCh38
1230
hg19
Lab
1808
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
biosample_type!
in vitro differentiated cells
organ_slims!
connective tissue
eye
BIOSAMPLE
ASSAY
2160 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
58
278
67
6
1
7
3
1
1
4
liver
145
167
20
1
2
3
1
1
1
1
kidney
27
49
75
64
13
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
3
4
1
1
1
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