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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
619
ChIP-seq
Assay category
619
DNA binding
Target of assay
620
histone modification
619
histone
320
narrow histone mark
299
broad histone mark
187
control
76
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
168
October, 2019
119
August, 2017
89
May, 2019
70
November, 2017
60
April, 2019
35
May, 2024
30
October, 2018
27
May, 2020
8
October, 2017
6
January, 2019
5
December, 2017
2
March, 2020
Available data
515
bed narrowPeak
514
bigWig
458
bam
309
bigBed narrowPeak
182
tagAlign
65
fastq
33
bed broadPeak
8
bed bed3+
1
tagAlign bed3+
Organism
613
Homo sapiens
Biosample type
619
tissue
193
primary cell
111
in vitro differentiated cells
37
cell line
2
stem cell
Organ
180
brain
95
heart
69
liver
69
pancreas
54
blood vessel
54
vasculature
49
limb
33
connective tissue
32
adipose tissue
25
musculature of body
24
nerve
20
artery
20
kidney
6
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
617
AMP
2
T1D
Genome assembly (visualization)
486
GRCh38
430
hg19
Lab
584
AMP-T2D consortium
35
Patrick T. Ellinor, Broad
Audit category:
2
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bed bedMethyl
hdf5
BIOSAMPLE
ASSAY
619 results
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Clear Filters
ChIP-seq
tissue
liver
64
islet of Langerhans
47
left cardiac atrium
35
subcutaneous abdominal adipose tissue
31
heart left ventricle
24
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