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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1000
total RNA-seq
881
ChIP-seq
254
ATAC-seq
180
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
15
WGBS
12
Hi-C
5
RRBS
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
2
FAIRE-seq
Assay category
1180
Transcription
881
DNA binding
286
DNA accessibility
20
DNA methylation
12
3D chromatin structure
Target of assay
620
histone modification
619
histone
320
narrow histone mark
299
broad histone mark
187
control
76
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
262
August, 2017
238
October, 2019
229
August, 2021
193
May, 2020
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
19
April, 2020
19
October, 2017
17
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1818
bam
1684
bigWig
1029
tsv
973
bed narrowPeak
556
bigBed narrowPeak
351
fastq
234
tagAlign
211
bed broadPeak
191
bed bed3+
bigBed broadPeak
157
txt
64
xls
11
bed bedMethyl
11
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2489
Homo sapiens
Biosample type
2498
tissue
964
primary cell
590
cell line
387
in vitro differentiated cells
10
stem cell
Organ
523
connective tissue
483
pancreas
464
adipose tissue
350
liver
266
heart
227
kidney
223
brain
158
bone element
121
blood vessel
121
vasculature
81
limb
68
artery
53
eye
43
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2401
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1597
GRCh38
1510
hg19
Lab
2146
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bigBed broadPeak
month_released!
July, 2019
BIOSAMPLE
ASSAY
2498 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
292
61
68
6
7
4
3
4
1
1
adipose tissue
382
2
3
1
3
liver
165
145
20
1
1
3
1
1
kidney
49
27
75
64
6
1
bone element
84
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