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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
291
ChIP-seq
217
ATAC-seq
174
single cell RNA-seq
136
total RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
11
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
310
Transcription
291
DNA binding
246
DNA accessibility
22
DNA methylation
16
3D chromatin structure
Target of assay
187
control
105
histone
105
histone modification
56
narrow histone mark
49
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
229
August, 2021
106
August, 2017
101
February, 2021
95
February, 2023
82
October, 2019
47
September, 2023
46
May, 2022
29
March, 2020
29
October, 2018
25
February, 2020
25
November, 2017
23
May, 2020
22
May, 2019
21
November, 2019
19
April, 2020
15
April, 2019
15
May, 2023
14
July, 2019
12
December, 2017
8
January, 2021
8
October, 2017
6
September, 2017
5
March, 2019
4
December, 2018
4
July, 2018
4
November, 2020
3
December, 2019
3
November, 2018
2
May, 2021
1
August, 2022
1
January, 2019
Available data
1882
bam
bigWig
1076
tsv
980
bed narrowPeak
558
bigBed narrowPeak
351
fastq
234
tagAlign
211
bed broadPeak
191
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
tagAlign bed3+
Organism
1001
Homo sapiens
Biosample type
1004
tissue
475
primary cell
139
cell line
134
in vitro differentiated cells
7
stem cell
Organ
208
kidney
156
heart
132
pancreas
100
bone element
96
liver
66
connective tissue
65
adipose tissue
63
blood vessel
63
vasculature
62
brain
53
eye
46
artery
31
limb
25
musculature of body
20
lung
16
skeleton
15
epithelium
12
nerve
9
spleen
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
909
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
147
GRCh38
108
hg19
Lab
713
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
88
inconsistent ontology term
9
audit script error
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bigWig
tagAlign bed3+
BIOSAMPLE
ASSAY
1004 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
7
75
64
49
6
1
1
islet of Langerhans
42
65
32
7
4
3
1
4
liver
63
1
20
1
1
1
3
bone element
84
coronary artery
2
35
1
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