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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
275
ChIP-seq
182
ATAC-seq
133
total RNA-seq
87
RNA microarray
81
single cell RNA-seq
28
snATAC-seq
22
pCHi-C
13
Hi-C
10
RRBS
9
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
275
DNA binding
214
Transcription
211
DNA accessibility
19
DNA methylation
13
3D chromatin structure
Target of assay
171
control
105
histone
105
histone modification
56
narrow histone mark
49
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
137
August, 2021
106
August, 2017
101
February, 2021
81
October, 2019
59
February, 2023
47
September, 2023
46
May, 2022
29
October, 2018
25
November, 2017
24
March, 2020
23
May, 2020
22
February, 2020
21
November, 2019
19
April, 2020
16
May, 2019
15
May, 2023
12
December, 2017
11
July, 2019
8
January, 2021
8
October, 2017
6
September, 2017
5
April, 2019
5
March, 2019
4
December, 2018
4
July, 2018
4
November, 2020
3
December, 2019
3
November, 2018
2
May, 2021
1
August, 2022
1
January, 2019
Available data
1750
bam
bigWig
965
tsv
807
bed narrowPeak
470
bigBed narrowPeak
351
fastq
234
tagAlign
184
bed broadPeak
164
bed bed3+
157
txt
149
bigBed broadPeak
64
xls
18
bed bedMethyl
18
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
845
Homo sapiens
Biosample type
848
tissue
472
primary cell
134
in vitro differentiated cells
129
cell line
7
stem cell
Organ
208
kidney
heart
132
pancreas
100
bone element
96
liver
66
connective tissue
65
adipose tissue
63
blood vessel
63
vasculature
62
brain
53
eye
46
artery
31
limb
25
musculature of body
20
lung
16
skeleton
15
epithelium
12
nerve
9
spleen
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
753
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
112
GRCh38
104
hg19
Lab
557
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
88
inconsistent ontology term
9
audit script error
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bigWig
organ_slims!
heart
BIOSAMPLE
ASSAY
848 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
7
75
49
64
6
1
1
islet of Langerhans
42
65
32
7
4
3
1
4
liver
63
20
1
1
1
1
3
bone element
84
subcutaneous abdominal adipose tissue
35
3
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