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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1018
total RNA-seq
561
ChIP-seq
181
ATAC-seq
179
single cell RNA-seq
178
DNase-seq
87
RNA microarray
27
WGBS
26
snATAC-seq
25
pCHi-C
16
small RNA-seq
11
RRBS
5
Hi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1213
Transcription
561
DNA binding
389
DNA accessibility
38
DNA methylation
5
3D chromatin structure
Target of assay
620
histone modification
619
histone
narrow histone mark
299
broad histone mark
187
control
76
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
228
August, 2021
215
August, 2017
166
May, 2020
163
June, 2019
120
July, 2018
112
October, 2019
February, 2023
82
May, 2019
77
July, 2019
66
May, 2022
63
October, 2018
57
April, 2019
54
November, 2017
47
September, 2023
46
December, 2017
40
May, 2021
39
November, 2019
31
March, 2020
26
November, 2018
25
February, 2020
25
May, 2024
19
April, 2020
18
October, 2017
15
May, 2023
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
January, 2019
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1643
bam
1483
bigWig
1072
tsv
653
bed narrowPeak
451
bigBed narrowPeak
327
fastq
197
bed broadPeak
188
bed bed3+
176
bigBed broadPeak
153
txt
125
tagAlign
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
hic
10
bedpe bed3+
6
csv
1
bedpe
Organism
2318
Homo sapiens
Biosample type
2325
tissue
858
primary cell
623
cell line
314
in vitro differentiated cells
9
stem cell
Organ
521
connective tissue
463
adipose tissue
445
pancreas
316
liver
288
kidney
236
heart
150
bone element
147
brain
107
limb
79
blood vessel
79
vasculature
71
musculature of body
35
nerve
32
artery
23
eye
23
spleen
20
lung
18
ureter
8
skeleton
2
intestine
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2248
AMP
47
KPMP
19
LungMap
11
T1D
Genome assembly (visualization)
1552
GRCh38
1451
hg19
Lab
2008
AMP-T2D consortium
141
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
34
Kyle Gaulton, UCSD
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
hic
month_released!
February, 2023
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
2325 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
small RNA-seq
RRBS
Hi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
287
27
57
6
1
5
4
1
1
1
4
adipose tissue
382
1
2
3
1
liver
167
103
20
1
2
3
1
1
1
kidney
49
17
75
64
13
6
1
1
bone element
84
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