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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
955
total RNA-seq
676
ChIP-seq
256
ATAC-seq
167
single cell RNA-seq
151
DNase-seq
27
WGBS
27
snATAC-seq
23
pCHi-C
16
Hi-C
12
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
RNA microarray
3
snDrop-seq
Assay category
1134
Transcription
676
DNA binding
437
DNA accessibility
37
DNA methylation
16
3D chromatin structure
Target of assay
440
histone modification
439
histone
232
broad histone mark
207
narrow histone mark
162
control
76
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
456
February, 2021
262
August, 2017
193
May, 2020
172
August, 2021
156
October, 2019
138
June, 2019
120
July, 2018
90
February, 2023
87
May, 2019
80
April, 2019
74
October, 2018
66
July, 2019
59
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
38
March, 2020
24
November, 2018
19
April, 2020
15
May, 2023
13
February, 2020
8
January, 2021
7
December, 2018
7
January, 2019
7
October, 2017
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1659
bam
1548
bigWig
1053
tsv
791
bed narrowPeak
445
bigBed narrowPeak
343
fastq
177
bed broadPeak
164
bed bed3+
txt
149
bigBed broadPeak
120
tagAlign
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
4
bed bed3
1
bedpe
Organism
2324
Homo sapiens
Biosample type
2333
tissue
1023
primary cell
648
cell line
385
in vitro differentiated cells
10
stem cell
Organ
535
connective tissue
489
pancreas
476
adipose tissue
361
liver
313
heart
brain
237
kidney
133
blood vessel
133
vasculature
122
limb
81
musculature of body
73
artery
70
bone element
56
eye
43
nerve
25
spleen
20
lung
18
ureter
15
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2236
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1634
GRCh38
1589
hg19
Lab
2044
AMP-T2D consortium
85
Katalin Susztak, Upenn
47
KPMP
46
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
3
audit script error
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
txt
organ_slims!
brain
BIOSAMPLE
ASSAY
2333 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
RNA microarray
snDrop-seq
tissue
islet of Langerhans
286
61
67
6
1
7
4
3
1
4
1
adipose tissue
382
2
3
3
1
liver
167
145
20
1
2
3
1
1
1
1
kidney
27
75
51
13
6
1
1
1
heart left ventricle
3
35
2
18
3
4
1
1
1
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