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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
889
total RNA-seq
612
ChIP-seq
150
DNase-seq
60
ATAC-seq
15
small RNA-seq
11
WGBS
6
single cell RNA-seq
4
FAIRE-seq
Assay category
910
Transcription
612
DNA binding
214
DNA accessibility
11
DNA methylation
Target of assay
400
histone modification
399
histone
217
narrow histone mark
182
broad histone mark
151
control
64
transcription factor
17
RNA binding protein
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
193
May, 2020
179
October, 2019
148
August, 2017
136
June, 2019
116
July, 2018
94
May, 2019
74
October, 2018
69
November, 2017
48
December, 2017
47
July, 2019
39
November, 2019
36
May, 2021
24
May, 2022
23
April, 2019
23
November, 2018
12
October, 2017
7
December, 2018
7
January, 2019
7
March, 2020
6
April, 2018
6
September, 2017
1
March, 2019
Available data
1747
bam
1587
bigWig
965
tsv
804
bed narrowPeak
467
bigBed narrowPeak
348
fastq
234
tagAlign
184
bed broadPeak
164
bed bed3+
157
txt
149
bigBed broadPeak
64
xls
18
bed bedMethyl
18
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1740
Homo sapiens
Biosample type
1747
tissue
553
primary cell
501
cell line
284
in vitro differentiated cells
3
stem cell
Organ
486
connective tissue
428
adipose tissue
419
pancreas
288
liver
223
brain
heart
114
limb
98
kidney
87
blood vessel
87
vasculature
66
bone element
44
musculature of body
42
nerve
34
artery
21
spleen
18
ureter
8
skeleton
3
eye
1
pituitary gland
Project
1745
AMP
2
T1D
Genome assembly (visualization)
1559
GRCh38
1512
hg19
Lab
1722
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
heart
target.investigated_as!
other context
BIOSAMPLE
ASSAY
1747 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
381
2
2
islet of Langerhans
266
20
1
38
6
1
liver
147
122
2
1
bone tissue
58
body of pancreas
2
35
4
4
2
2
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