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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
DNase-seq
14
ChIP-seq
1
snATAC-seq
Assay category
172
DNA accessibility
14
DNA binding
Target of assay
8
histone
8
histone modification
5
broad histone mark
3
control
3
narrow histone mark
3
transcription factor
1
RNA binding protein
Date released
160
June, 2019
12
August, 2017
9
November, 2018
2
October, 2019
2
September, 2017
1
May, 2022
Available data
1795
bam
1676
bigWig
1062
tsv
880
bed narrowPeak
496
bigBed narrowPeak
350
fastq
234
tagAlign
205
bed broadPeak
186
bed bed3+
171
bigBed broadPeak
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
186
Homo sapiens
Biosample type
186
tissue
29
primary cell
25
in vitro differentiated cells
3
cell line
3
stem cell
Organ
68
kidney
36
limb
33
musculature of body
27
brain
27
heart
18
ureter
17
pancreas
6
liver
5
blood vessel
vasculature
4
artery
3
eye
2
adipose tissue
2
connective tissue
2
nerve
1
spleen
Project
186
AMP
Genome assembly (visualization)
185
GRCh38
170
hg19
Lab
186
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
lab.title!
Stephen Parker, UMich
organ_slims!
vasculature
BIOSAMPLE
ASSAY
186 results
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Clear Filters
DNase-seq
ChIP-seq
snATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
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