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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
374
ChIP-seq
177
DNase-seq
84
RNA microarray
59
total RNA-seq
13
single cell RNA-seq
4
FAIRE-seq
3
ATAC-seq
1
snATAC-seq
Assay category
374
DNA binding
185
DNA accessibility
72
Transcription
Target of assay
309
histone
309
histone modification
202
broad histone mark
107
narrow histone mark
65
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
163
June, 2019
93
May, 2019
89
February, 2021
64
April, 2019
57
August, 2021
57
November, 2017
47
October, 2019
45
October, 2018
36
December, 2017
22
August, 2017
17
November, 2018
7
May, 2022
6
January, 2019
4
February, 2023
3
December, 2018
3
October, 2017
2
July, 2019
Available data
1882
bam
1747
bigWig
1076
tsv
980
bed narrowPeak
558
bigBed narrowPeak
351
fastq
234
tagAlign
211
bed broadPeak
191
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
709
Homo sapiens
Biosample type
715
tissue
344
cell line
109
primary cell
20
in vitro differentiated cells
Organ
149
kidney
113
brain
88
bone element
88
heart
84
limb
68
pancreas
62
blood vessel
62
vasculature
49
liver
39
musculature of body
26
nerve
25
artery
18
ureter
13
spleen
10
adipose tissue
10
connective tissue
4
skeleton
3
eye
Project
715
AMP
Genome assembly (visualization)
552
GRCh38
491
hg19
Lab
652
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
27
inconsistent control
6
audit script error
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
715 results
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ChIP-seq
DNase-seq
RNA microarray
total RNA-seq
single cell RNA-seq
FAIRE-seq
ATAC-seq
snATAC-seq
tissue
kidney
18
13
49
13
1
bone element
84
liver
38
2
heart left ventricle
28
3
body of pancreas
26
4
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