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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
267
ChIP-seq
177
DNase-seq
4
FAIRE-seq
3
ATAC-seq
Assay category
267
DNA binding
184
DNA accessibility
Target of assay
309
histone
309
histone modification
202
broad histone mark
narrow histone mark
65
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
163
June, 2019
60
May, 2019
42
April, 2019
38
November, 2017
35
October, 2019
34
December, 2017
34
October, 2018
17
November, 2018
16
August, 2017
4
January, 2019
3
December, 2018
3
October, 2017
2
July, 2019
Available data
1643
bam
1483
bigWig
1076
tsv
716
bed narrowPeak
451
bigBed narrowPeak
327
fastq
197
bed broadPeak
188
bed bed3+
176
bigBed broadPeak
157
txt
125
tagAlign
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
447
Homo sapiens
Biosample type
451
tissue
334
cell line
83
primary cell
12
in vitro differentiated cells
Organ
84
brain
79
kidney
70
limb
68
heart
46
liver
46
pancreas
44
blood vessel
44
vasculature
36
musculature of body
19
artery
18
nerve
18
ureter
11
spleen
9
adipose tissue
9
connective tissue
3
eye
Project
451
AMP
Genome assembly (visualization)
446
GRCh38
399
hg19
Lab
451
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
451 results
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Clear Filters
ChIP-seq
DNase-seq
FAIRE-seq
ATAC-seq
tissue
liver
37
2
body of pancreas
20
4
kidney
10
13
1
heart
5
18
heart left ventricle
20
3
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