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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1024
total RNA-seq
733
ChIP-seq
252
ATAC-seq
180
single cell RNA-seq
142
DNase-seq
87
RNA microarray
28
snATAC-seq
26
WGBS
25
pCHi-C
16
small RNA-seq
12
Hi-C
11
RRBS
4
FAIRE-seq
3
snDrop-seq
Assay category
1220
Transcription
733
DNA binding
426
DNA accessibility
37
DNA methylation
12
3D chromatin structure
Target of assay
501
histone modification
500
histone
277
narrow histone mark
223
broad histone mark
156
control
76
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
539
February, 2021
262
August, 2017
229
August, 2021
193
May, 2020
173
October, 2019
131
June, 2019
120
July, 2018
108
May, 2019
95
February, 2023
November, 2017
80
April, 2019
74
October, 2018
72
July, 2019
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
22
February, 2020
19
April, 2020
19
October, 2017
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1699
bam
1599
bigWig
1069
tsv
830
bed narrowPeak
417
bigBed narrowPeak
351
fastq
169
bed broadPeak
168
tagAlign
157
txt
155
bed bed3+
140
bigBed broadPeak
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2534
Homo sapiens
Biosample type
2543
tissue
1035
primary cell
388
in vitro differentiated cells
338
cell line
10
stem cell
Organ
535
connective tissue
491
pancreas
476
adipose tissue
361
liver
313
heart
299
kidney
179
brain
158
bone element
133
blood vessel
133
vasculature
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2446
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1681
GRCh38
1628
hg19
Lab
2195
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
month_released!
November, 2017
organ_slims!
limb
BIOSAMPLE
ASSAY
2543 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
292
60
68
6
1
7
4
3
1
1
adipose tissue
382
2
3
3
1
liver
167
145
20
1
2
3
1
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
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