Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
997
total RNA-seq
756
ChIP-seq
192
ATAC-seq
148
DNase-seq
87
RNA microarray
87
single cell RNA-seq
28
snATAC-seq
19
WGBS
18
pCHi-C
15
small RNA-seq
13
Hi-C
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1099
Transcription
756
DNA binding
372
DNA accessibility
29
DNA methylation
13
3D chromatin structure
Target of assay
523
histone modification
522
histone
280
narrow histone mark
242
broad histone mark
171
control
64
transcription factor
17
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
262
August, 2017
213
October, 2019
193
May, 2020
137
August, 2021
133
June, 2019
120
July, 2018
94
May, 2019
82
November, 2017
74
October, 2018
66
May, 2022
57
July, 2019
48
December, 2017
47
September, 2023
40
November, 2019
38
May, 2021
33
March, 2020
28
February, 2023
26
November, 2018
23
April, 2019
21
February, 2020
19
April, 2020
18
October, 2017
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1747
bam
1586
bigWig
960
tsv
777
bed narrowPeak
467
bigBed narrowPeak
350
fastq
234
tagAlign
180
bed broadPeak
161
bed bed3+
157
txt
146
bigBed broadPeak
64
xls
18
bed bedMethyl
18
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2372
Homo sapiens
Biosample type
2381
tissue
1026
primary cell
583
cell line
387
in vitro differentiated cells
10
stem cell
Organ
535
connective tissue
494
pancreas
476
adipose tissue
361
liver
heart
299
kidney
261
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2284
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1639
GRCh38
1586
hg19
Lab
2070
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
lab.title!
Stephen Parker, UMich
organ_slims!
eye
heart
BIOSAMPLE
ASSAY
2381 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
278
59
66
1
6
7
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
2
1
3
1
1
1
1
kidney
49
27
75
13
64
6
1
1
1
bone element
84
+ See 158 more…
See all biosamples
Download