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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1003
total RNA-seq
757
ChIP-seq
176
ATAC-seq
151
DNase-seq
87
RNA microarray
87
single cell RNA-seq
26
snATAC-seq
22
pCHi-C
19
WGBS
15
small RNA-seq
13
Hi-C
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1105
Transcription
757
DNA binding
357
DNA accessibility
29
DNA methylation
13
3D chromatin structure
Target of assay
524
histone modification
523
histone
281
narrow histone mark
242
broad histone mark
171
control
64
transcription factor
17
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
262
August, 2017
232
October, 2019
193
May, 2020
137
August, 2021
136
June, 2019
120
July, 2018
94
May, 2019
82
November, 2017
74
October, 2018
66
May, 2022
February, 2023
57
July, 2019
48
December, 2017
47
September, 2023
40
November, 2019
38
May, 2021
33
March, 2020
26
November, 2018
23
April, 2019
22
February, 2020
19
April, 2020
19
October, 2017
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1749
bam
1589
bigWig
961
tsv
778
bed narrowPeak
470
bigBed narrowPeak
351
fastq
233
tagAlign
184
bed broadPeak
164
bed bed3+
153
txt
149
bigBed broadPeak
64
xls
18
bed bedMethyl
18
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2368
Homo sapiens
Biosample type
2377
tissue
943
primary cell
577
cell line
371
in vitro differentiated cells
10
stem cell
Organ
534
connective tissue
477
pancreas
475
adipose tissue
361
liver
299
kidney
heart
260
brain
150
bone element
122
limb
98
blood vessel
98
vasculature
82
musculature of body
43
nerve
38
artery
25
eye
25
spleen
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
pituitary gland
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2298
AMP
47
KPMP
19
LungMap
13
T1D
Genome assembly (visualization)
1642
GRCh38
1583
hg19
Lab
2083
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
34
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
February, 2023
organ_slims!
heart
pituitary gland
BIOSAMPLE
ASSAY
2377 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
snATAC-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
287
61
56
1
6
5
4
3
1
1
4
adipose tissue
382
2
2
1
3
liver
167
145
20
2
1
1
3
1
1
1
kidney
49
27
75
13
64
6
1
1
1
bone element
84
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