Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
992
total RNA-seq
579
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
24
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1188
Transcription
579
DNA binding
470
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
614
histone modification
613
histone
318
narrow histone mark
broad histone mark
186
control
76
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
203
October, 2019
193
May, 2020
190
August, 2017
163
June, 2019
120
July, 2018
95
February, 2023
77
July, 2019
66
May, 2022
59
May, 2019
55
October, 2018
47
September, 2023
45
December, 2017
43
April, 2019
40
March, 2020
May, 2021
40
November, 2017
40
November, 2019
26
November, 2018
25
February, 2020
20
May, 2024
19
April, 2020
15
May, 2023
12
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
January, 2019
2
January, 2018
1
August, 2022
Available data
1622
bam
1457
bigWig
1038
tsv
727
bed narrowPeak
354
bigBed narrowPeak
307
fastq
192
bed broadPeak
186
bed bed3+
176
bigBed broadPeak
161
tagAlign
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2404
Homo sapiens
Biosample type
2409
tissue
803
primary cell
586
cell line
210
in vitro differentiated cells
9
stem cell
Organ
515
connective tissue
456
adipose tissue
418
pancreas
336
liver
289
kidney
254
heart
194
brain
158
bone element
97
blood vessel
97
vasculature
88
limb
66
musculature of body
59
artery
56
eye
27
nerve
20
lung
18
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2313
AMP
47
KPMP
30
T1D
19
LungMap
Genome assembly (visualization)
1555
GRCh38
1495
hg19
Lab
2079
AMP-T2D consortium
142
Katalin Susztak, Upenn
50
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
20
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
missing controlled_by
Audit category:
3
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
January, 2019
May, 2021
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
2409 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
256
48
68
6
1
7
4
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
123
20
1
2
3
1
1
1
1
kidney
49
17
75
64
13
6
1
1
1
bone element
84
+ See 175 more…
See all biosamples
Download