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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
735
ChIP-seq
557
total RNA-seq
226
ATAC-seq
180
single cell RNA-seq
173
DNase-seq
86
RNA microarray
28
snATAC-seq
21
WGBS
20
pCHi-C
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
751
Transcription
735
DNA binding
431
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
515
histone modification
514
histone
277
narrow histone mark
237
broad histone mark
151
control
71
transcription factor
22
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
228
August, 2021
219
October, 2019
217
August, 2017
193
May, 2020
159
June, 2019
120
July, 2018
115
May, 2019
101
February, 2021
November, 2017
80
April, 2019
67
July, 2019
66
May, 2022
63
February, 2023
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
March, 2020
39
November, 2019
25
November, 2018
22
February, 2020
19
April, 2020
18
October, 2017
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1324
bam
1218
bigWig
879
bed narrowPeak
614
tsv
488
bigBed narrowPeak
320
fastq
199
bed broadPeak
186
bed bed3+
171
bigBed broadPeak
160
tagAlign
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2070
Homo sapiens
Biosample type
2078
tissue
991
primary cell
344
cell line
296
in vitro differentiated cells
9
stem cell
Organ
connective tissue
495
pancreas
476
adipose tissue
361
liver
313
heart
299
kidney
179
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1981
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1306
GRCh38
1224
hg19
Lab
1726
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
November, 2017
organ_slims!
connective tissue
eye
BIOSAMPLE
ASSAY
2078 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
58
278
67
6
1
7
3
1
1
4
liver
145
167
20
1
2
3
1
1
1
1
kidney
27
49
75
64
13
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
3
4
1
1
1
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