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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
807
ChIP-seq
557
total RNA-seq
226
ATAC-seq
180
single cell RNA-seq
165
DNase-seq
86
RNA microarray
28
snATAC-seq
20
pCHi-C
16
Hi-C
15
WGBS
14
small RNA-seq
11
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
807
DNA binding
751
Transcription
422
DNA accessibility
26
DNA methylation
16
3D chromatin structure
Target of assay
585
histone modification
584
histone
305
narrow histone mark
279
broad histone mark
160
control
64
transcription factor
22
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
228
August, 2021
219
October, 2019
217
August, 2017
193
May, 2020
159
June, 2019
120
July, 2018
115
May, 2019
101
February, 2021
82
November, 2017
80
April, 2019
67
July, 2019
66
May, 2022
63
February, 2023
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
March, 2020
39
November, 2019
November, 2018
22
February, 2020
19
April, 2020
18
October, 2017
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1368
bam
1253
bigWig
921
bed narrowPeak
614
tsv
529
bigBed narrowPeak
295
fastq
226
tagAlign
197
bed broadPeak
178
bed bed3+
163
bigBed broadPeak
157
txt
64
xls
17
bed bedMethyl
17
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2127
Homo sapiens
Biosample type
2135
tissue
999
primary cell
591
cell line
296
in vitro differentiated cells
9
stem cell
Organ
connective tissue
488
pancreas
475
adipose tissue
354
liver
313
heart
299
kidney
259
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
eye
43
nerve
20
lung
18
ureter
16
skeleton
16
spleen
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2038
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1342
GRCh38
1214
hg19
Lab
1783
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
November, 2018
organ_slims!
connective tissue
eye
BIOSAMPLE
ASSAY
2135 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
WGBS
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
58
278
67
6
1
7
3
1
4
1
liver
141
167
20
1
1
1
3
1
1
kidney
27
49
75
64
13
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
3
1
1
4
1
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