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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
694
ChIP-seq
619
total RNA-seq
215
ATAC-seq
149
DNase-seq
87
single cell RNA-seq
86
RNA microarray
28
snATAC-seq
21
pCHi-C
13
Hi-C
13
WGBS
13
small RNA-seq
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
719
Transcription
694
DNA binding
396
DNA accessibility
23
DNA methylation
13
3D chromatin structure
Target of assay
493
histone modification
492
histone
270
narrow histone mark
222
broad histone mark
147
control
59
transcription factor
12
RNA binding protein
3
other context
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
233
October, 2019
217
August, 2017
193
May, 2020
159
February, 2021
136
August, 2021
135
June, 2019
120
July, 2018
94
May, 2019
82
November, 2017
66
May, 2022
58
February, 2023
51
October, 2018
48
December, 2017
47
July, 2019
47
September, 2023
39
November, 2019
38
May, 2021
32
March, 2020
23
April, 2019
22
November, 2018
20
February, 2020
19
April, 2020
18
October, 2017
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1319
bam
1176
bigWig
791
bed narrowPeak
566
tsv
457
bigBed narrowPeak
317
fastq
226
tagAlign
181
bed broadPeak
162
bed bed3+
157
txt
147
bigBed broadPeak
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1951
Homo sapiens
Biosample type
1959
tissue
1029
primary cell
581
cell line
386
in vitro differentiated cells
10
stem cell
Organ
535
connective tissue
495
pancreas
adipose tissue
361
liver
heart
299
kidney
261
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
22
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1862
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1230
GRCh38
1202
hg19
Lab
1647
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
adipose tissue
heart
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
1959 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
WGBS
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
61
292
68
1
6
7
4
3
1
1
4
liver
145
167
20
2
1
1
1
3
1
1
kidney
27
49
75
13
64
6
1
1
1
bone element
84
bone tissue
58
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